9AM-10:30AM | 10:30AM-12:30PM | 12:30-2PM | 2PM-3:30PM | 3:30PM-5:30PM | 5:30PM-7PM | 7PM-9PM | 9PM-11PM |
|
|---|---|---|---|---|---|---|---|---|
| 14th Mon | Basic Unix Basic Perl | UNIX Problem Set Perl I Problem Set Solutions | LUNCH | Perl II: Logic | Perl II Problem Set Solutions | DINNER | Review Review code | Problem Sets |
| 15th Tue | Perl III: File I/O Code and files from lecture: PerlIII_inclass.zip | Perl III Problem Set Solutions | LUNCH | Perl IV: Arrays and lists | Perl IV Problem Set Solutions | DINNER | Review Perl Debugger | Problem Sets |
| 16th Wed | Perl V: Hashes Code | Perl V Problem Set Solutions | LUNCH | Perl VI: Regular expressions | Perl VI Problem Set Solutions | 5PM:WINE & CHEESE DINNER | Version Control: git Review Tab-delimited parsing example | Problem Sets |
| 17th Thr | Perl VII: Subroutines and scope | Perl VII Problem Set Solutions | LUNCH | Perl VIII: Modules | Perl VIII Problem Set Solutions | DINNER | Review | Problem Sets |
| 18th Fri | Perl IX: References | Perl IX Problem Set Solutions | LUNCH | Perl X: Objects | Perl X Problem Set Solutions | DINNER | Perl XI: Perl Pipelines Emacs Tutorial (Jessen) Vim tutorial (Steven) | Problem Sets |
| 19th Sat | FREE | FREE | LUNCH | FREE | FREE | DINNER | FREE | FREE |
| 20th Sun | BioPerl Lecture Code | BioPerl Problem Set | LUNCH | Genome Annotation with Maker Barry Moore | Maker Workshop Maker Lab Commands Maker Lab script Barry Moore | DINNER | HTML | Problem Sets |
| 21st Mon | NGS & SNP calling Jason Stajich | NGS & SNP calling Workshop NGS Lab Commands Jason Stajich | LUNCH | Variations & Disease Gene with VAAST Barry Moore | VAAST Workshop Barry Moore | DINNER | Structural Variation Tomas Marques | Problem Sets |
| 22nd Tue | Sequence Similarity FASTA/BLAST Bill Pearson | Sequence Similarity Workshop Bill Pearson | LUNCH Class Photo 1:45 pm outside Blackford Bar | Sequence Similarity lecture 2 Bill Pearson | Sequence Similarity Workshop 2 Lab script Bill Pearson | DINNER | Predicted Protein Function Paul Thomas SysAdmin for Bioinformatics | 9PM:Intoduction to Projects Problem Sets |
| 23th Wed | CGI web programming (Simon) | CGI Problem Sets | LUNCH | Gbrowse genome browser workshop Scott Cain | Gbrowse Workshop cont. Scott Cain | DINNER | Scientific Computing Jim Tisdall | 9PM:Submit Project Ideas Problem Sets |
| 24th Thr | Genome Assembly Mike Schatz | Genome Assembly with ALLPATHS-LG Mike Schatz | LUNCH | RNA-Seq de novo and guided assembly with Trinity and Tuxedo Suite Brian Haas | RNA-Seq with Trinity and Tuxedo Brian Haas | DINNER | RNAseq Brian Haas | 9PM:Project Signup Problem Sets |
| 25th Fri | FREE | FREE | LUNCH | FREE | FREE | DINNER | FREE | 9PM:Halloween Party!! |
| 26th Sat | Projects | Projects | LUNCH | Projects | Projects | DINNER | Projects | Projects |
| 27th Sun | Projects | Projects | LUNCH | Projects | Projects | DINNER | Projects | Projects |
| 28th Mon | Projects | Projects | LUNCH | Presentations | Banquet | DINNER | Banquet | |
| 29th Tue | Good-byes |