Command needed for VAAST workshop: VAAST -m lrt -iht r -pnt c –trio Trio_Rec_Parents.cdr -o Trio_Rec -d 1e6 -p 40 -k ../../data/refGene_hg19_chr3.gff3 ../../data/1KG_chr3_Background.cdr Trio_Rec_Parents.cdr

inFasta_doStuff_outFasta.pl inFasta_loop.pl convert_genbank2fasta.pl createSeqOnFly.pl inFasta_outGenBank.pl local_seq_query.pl multi_align_convert.pl getSeq_genbank.pl get_annot_from_genbank.pl blast_parser_intro.pl sample_blast_parser.pl sample_blast_parser_1.pl sample_blast_parser_2.pl

#!/usr/bin/perl use warnings; use strict; use Data::Dumper;   ## create a hash all at once my %genetic_code = ( "ATG" => "Met", "AAA" => "Lys", "CCA" => "Pro", );   ## print a singe key/value pair print "Before/ATG: " , $genetic_code{"ATG"} ,"\n";   ##print out the entire hash one key/value pair at a time foreach… (read more)