inFasta_doStuff_outFasta.pl inFasta_loop.pl convert_genbank2fasta.pl createSeqOnFly.pl inFasta_outGenBank.pl local_seq_query.pl multi_align_convert.pl getSeq_genbank.pl get_annot_from_genbank.pl blast_parser_intro.pl sample_blast_parser.pl sample_blast_parser_1.pl sample_blast_parser_2.pl
Sofia Robb
All posts by Sofia Robb
Gbrowse Key
gbrowse_key
AWS logins for MAKER 10/20
BioPerl Lecture Scripts
inFasta_doStuff_outFasta.pl inFasta_loop.pl convert_genbank2fasta.pl createSeqOnFly.pl inFasta_outGenBank.pl local_seq_query.pl multi_align_convert.pl getSeq_genbank.pl get_annot_from_genbank.pl blast_parser_intro.pl sample_blast_parser.pl sample_blast_parser_1.pl sample_blast_parser_2.pl
Lecture Code: Perl V: Hashes
#!/usr/bin/perl use warnings; use strict; use Data::Dumper; ## create a hash all at once my %genetic_code = ( "ATG" => "Met", "AAA" => "Lys", "CCA" => "Pro", ); ## print a singe key/value pair print "Before/ATG: " , $genetic_code{"ATG"} ,"\n"; ##print out the entire hash one key/value pair at a time foreach… (read more)
Review Session Scripts Perl II & III
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 #!/usr/bin/perl #Perl_3-5.pl #finds occurrences of Nobody and somebody within text using index use strict; use warnings; my $nobody_infile = ‘perl_III_nobody.txt’; my $nobody_outfile… (read more)
Lecture: Unix
UNIX – Command-Line Survival Guide
Problem Set: Perl IV
Perl IV Problem Set Files for Perl IV Problem Set Perl_IV.fasta
Problem Set: Perl III
Files for Perl III Problem Set: Perl_III.nobody.txt Perl_III.fastq Perl_III.fasta
Command line Cheat Sheet
fwunixref