LOCUS       NM_001298872            1719 bp    mRNA    linear   INV 05-AUG-2014
DEFINITION  Drosophila melanogaster no mitochondrial derivative (nmd),
            transcript variant C, mRNA.
ACCESSION   NM_001298872
VERSION     NM_001298872.1  GI:665407421
KEYWORDS    RefSeq.
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
            Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
            Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
  TITLE     Sequence finishing and mapping of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1625-1628 (2007)
   PUBMED   17569867
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  TITLE     The Release 5.1 annotation of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1586-1591 (2007)
   PUBMED   17569856
  REMARK    Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE   3  (bases 1 to 1719)
  AUTHORS   Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
            Ashburner,M. and Anxolabehere,D.
  TITLE     Combined evidence annotation of transposable elements in genome
            sequences
  JOURNAL   PLoS Comput. Biol. 1 (2), 166-175 (2005)
   PUBMED   16110336
REFERENCE   4  (bases 1 to 1719)
  AUTHORS   Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
            Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
            Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
            Celniker,S.E., Rubin,G.M. and Karpen,G.H.
  TITLE     Heterochromatic sequences in a Drosophila whole-genome shotgun
            assembly
  JOURNAL   Genome Biol. 3 (12), RESEARCH0085 (2002)
   PUBMED   12537574
REFERENCE   5  (bases 1 to 1719)
  AUTHORS   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
            Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
            Rubin,G.M., Ashburner,M. and Celniker,S.E.
  TITLE     The transposable elements of the Drosophila melanogaster
            euchromatin: a genomics perspective
  JOURNAL   Genome Biol. 3 (12), RESEARCH0084 (2002)
   PUBMED   12537573
REFERENCE   6  (bases 1 to 1719)
  AUTHORS   Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
            Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
            Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
            Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
            Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
            Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
            Rubin,G.M. and Lewis,S.E.
  TITLE     Annotation of the Drosophila melanogaster euchromatic genome: a
            systematic review
  JOURNAL   Genome Biol. 3 (12), RESEARCH0083 (2002)
   PUBMED   12537572
REFERENCE   7  (bases 1 to 1719)
  AUTHORS   Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
            Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
            Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
            Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
            Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
            Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
            Gibbs,R.A. and Rubin,G.M.
  TITLE     Finishing a whole-genome shotgun: release 3 of the Drosophila
            melanogaster euchromatic genome sequence
  JOURNAL   Genome Biol. 3 (12), RESEARCH0079 (2002)
   PUBMED   12537568
REFERENCE   8  (bases 1 to 1719)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
            Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
            Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
            Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
            Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
            Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
            Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
            Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
            Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
            Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
            Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
            Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
            Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
            Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
            Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
            Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
            Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
            McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
            Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
            Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
            Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
            Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
            Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
            Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
            Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
            Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
            Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
            Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
            Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
            Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
            Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
  TITLE     The genome sequence of Drosophila melanogaster
  JOURNAL   Science 287 (5461), 2185-2195 (2000)
   PUBMED   10731132
REFERENCE   9  (bases 1 to 1719)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
            Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
            Smith,E., Yu,C. and Rubin,G.
  CONSRTM   Berkeley Drosophila Genome Project
  TITLE     Drosophila melanogaster release 4 sequence
  JOURNAL   Unpublished
REFERENCE   10 (bases 1 to 1719)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2014) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   11 (bases 1 to 1719)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2014) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   12 (bases 1 to 1719)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2012) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   13 (bases 1 to 1719)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2012) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   14 (bases 1 to 1719)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2011) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   15 (bases 1 to 1719)
  AUTHORS   Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
            Park,S., Svirskas,R. and Karpen,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
            Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   16 (bases 1 to 1719)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
            Svirskas,R. and Rubin,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
            64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   17 (bases 1 to 1719)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  CONSRTM   Drosophila Heterochromatin Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
            Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
            Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE   18 (bases 1 to 1719)
  AUTHORS   Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
            Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by FlyBase. This
            record is derived from an annotated genomic sequence (NT_033779).
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Drosophila melanogaster"
                     /mol_type="mRNA"
                     /db_xref="taxon:7227"
                     /chromosome="2L"
                     /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
                     bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
     gene            1..1719
                     /gene="nmd"
                     /locus_tag="Dmel_CG5395"
                     /gene_synonym="anon-EST:Liang-1.79; CG5395; clone 1.79;
                     DmCG5395; Dmel\CG5395; l(2)08774; ms(2)4; ms(2)ry4; Msp;
                     Msp1"
                     /note="no mitochondrial derivative"
                     /map="31D1-31D1"
                     /db_xref="FLYBASE:FBgn0005322"
                     /db_xref="GeneID:44021"
     CDS             112..1221
                     /gene="nmd"
                     /locus_tag="Dmel_CG5395"
                     /gene_synonym="anon-EST:Liang-1.79; CG5395; clone 1.79;
                     DmCG5395; Dmel\CG5395; l(2)08774; ms(2)4; ms(2)ry4; Msp;
                     Msp1"
                     /EC_number="3.6.1.3"
                     /note="CG5395 gene product from transcript CG5395-RC;
                     CG5395-PC; nmd-PC; mitochondrial sorting protein 1"
                     /codon_start=1
                     /product="no mitochondrial derivative, isoform C"
                     /protein_id="NP_001285801.1"
                     /db_xref="GI:665407422"
                     /db_xref="FLYBASE:FBpp0310207"
                     /db_xref="FLYBASE:FBgn0005322"
                     /db_xref="GeneID:44021"
                     /translation="MDNFGLGGSDLSKGQIFQVLVRLSVASLITYYSVKWMMNQMDPT
                     SKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIAGL
                     DSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRF
                     INLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAMM
                     KTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILK
                     LILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRN
                     NVRITMDDLLGSHLKIKESKMHTSSLFLENRIELD"
     misc_feature    409..906
                     /gene="nmd"
                     /locus_tag="Dmel_CG5395"
                     /gene_synonym="anon-EST:Liang-1.79; CG5395; clone 1.79;
                     DmCG5395; Dmel\CG5395; l(2)08774; ms(2)4; ms(2)ry4; Msp;
                     Msp1"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    505..909
                     /gene="nmd"
                     /locus_tag="Dmel_CG5395"
                     /gene_synonym="anon-EST:Liang-1.79; CG5395; clone 1.79;
                     DmCG5395; Dmel\CG5395; l(2)08774; ms(2)4; ms(2)ry4; Msp;
                     Msp1"
                     /note="ATPases associated with a variety of cellular
                     activities; Region: AAA; smart00382"
                     /db_xref="CDD:214640"
     misc_feature    order(529..552,703..705,841..843)
                     /gene="nmd"
                     /locus_tag="Dmel_CG5395"
                     /gene_synonym="anon-EST:Liang-1.79; CG5395; clone 1.79;
                     DmCG5395; Dmel\CG5395; l(2)08774; ms(2)4; ms(2)ry4; Msp;
                     Msp1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    526..549
                     /gene="nmd"
                     /locus_tag="Dmel_CG5395"
                     /gene_synonym="anon-EST:Liang-1.79; CG5395; clone 1.79;
                     DmCG5395; Dmel\CG5395; l(2)08774; ms(2)4; ms(2)ry4; Msp;
                     Msp1"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    691..708
                     /gene="nmd"
                     /locus_tag="Dmel_CG5395"
                     /gene_synonym="anon-EST:Liang-1.79; CG5395; clone 1.79;
                     DmCG5395; Dmel\CG5395; l(2)08774; ms(2)4; ms(2)ry4; Msp;
                     Msp1"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    877..879
                     /gene="nmd"
                     /locus_tag="Dmel_CG5395"
                     /gene_synonym="anon-EST:Liang-1.79; CG5395; clone 1.79;
                     DmCG5395; Dmel\CG5395; l(2)08774; ms(2)4; ms(2)ry4; Msp;
                     Msp1"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
ORIGIN      
        1 cagtcggagc acctggtcac actgtcgtcg gtgtgcatgg ggaataagaa caagaaagat
       61 tagattcgtg caggccaacg tatttgctct aaatagaata tctgcagaaa catggacaac
      121 ttcggactgg gcggatcgga tctaagcaag gggcagatat tccaggtact ggttcgcctg
      181 tctgtggcct cgctgatcac atattattcg gtgaaatgga tgatgaacca gatggatccg
      241 accagtaaaa acaagaaaaa ggccaaagtt ctggctgagg agcagcttaa gaggctagcc
      301 gagcaggagg gcttcaagct aagagggcaa gagtttagcg actacgagct tatgattgcg
      361 tcacatcttg ttgttcccgc cgacataaca gtcagttggg ccgatatcgc cggtctggat
      421 tcagtcattc aggagctccg ggaatcggtg gtgctgccaa tccagcacaa ggatctcttc
      481 aagcattcga agctgtggca ggcgcccaaa ggcgtcctgc tccatggacc accgggctgt
      541 ggaaagacgc tgatagcgaa ggcgacggca aaagaggcgg gaatgcgctt tatcaacttg
      601 gacgtcgcca ttcttaccga caagtggtac ggggaatccc agaaattgac ttctgctgtc
      661 ttctcgcttg catcgcgaat cgagccatgc attattttta ttgacgaaat agactcattt
      721 ttgcgatctc gaaacatgaa cgaccacgag gctaccgcca tgatgaagac ccagtttatg
      781 atgctgtggg atggcctcag cacgaacgcc aactcgacgg tgattgtgat gggtgccacg
      841 aacaggccgc aggatttaga caaggccatt gtgcgccgca tgccagccca attccacatt
      901 ggtctgccct cggagaccca acgaaaagac atcctgaagc tgatcctcca atcggaggaa
      961 gtaagtcagg atgtcgactt gaatcgcttg tccaagctca caaatggctt ctcgggctca
     1021 gacctgcggg aaatgtgccg gaatgcttca gtttaccgaa tgaggcagct catcacgtcc
     1081 agagatccgt cagctacagc gcttgatcgc aacaacgtcc gcatcaccat ggacgatttg
     1141 ctgggctcgc acttaaaaat taaggaatca aagatgcaca cgagcagcct attcttagag
     1201 aatagaatcg aattagatta agctgaccat tgtttattca agctcccgat atatccaact
     1261 taaatttgta taataaactt tttatttgcc tttcgagagg agctccaatg ttatgtgtta
     1321 attaaccctg ttctctgcat tccaaaatgg gtatccggaa aacgtagttt tggtagtctt
     1381 gaaaacagca acggatactg caggaaatta cacaatccat agcatttccg taaagcggag
     1441 ctcaatgcac tttaattatt acatttacgg gcttctgtga aatattcacc tagagaaatt
     1501 tcaaacattt ataaagatat tgcacttgta cacttcttca aacacacaca caacttgcgt
     1561 cacgcgaccg tgggctttca atcgtaaaaa aaaatataag taaacttgtg cagttttatt
     1621 ctcttttaaa aaggtcgttt atttctgacg gcatttcaaa gctacacatt tgtatatcta
     1681 attaaaaatg aataaaaaca tgcatacatt ttaaataat
//

